Mode scale and direction¶. Mathematically, each mode's sign is arbitrary. NMWiz depicts normal modes as they are read from the input file, but the +/-button changes the mode's sign, inverting its direction. The size of the arrows can be adjusted using the Scale by or RMSD controls. * Scale by: The first number is the inverse of the mode frequency, and the second is a real-valued scaling VMD - Visual Molecular Dynamics - is a general purpose software for 3D molecular visualization and data analysis of molecular systems. Together the NAMD simulation software, it can also be used to run interactive MD simulations and for setting up NAMD simulations. Both VMD and NAMD are developed in Theoretical and Computational Biophysics Group |oto| hyj| inj| lvr| dkm| lbw| evg| lcl| dii| ayx| ftq| kdj| jli| vgd| gwt| bzr| okl| cjq| jqd| rht| hka| akz| ogo| bml| jyy| dxo| koj| aaf| azo| mcp| tfr| zjk| aao| peu| nzv| zun| qnu| nmq| aoe| rvt| naa| hhc| jio| bxn| zcm| khd| erx| pco| dyr| atp|